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36 lines
1.2 KiB
Bash
36 lines
1.2 KiB
Bash
#!/bin/bash
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# See http://wiki.ex3.simula.no before changing the values below
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#SBATCH -p dgx2q # partition (GPU queue)
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#SBATCH -N 1 # number of nodes
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#SBATCH -n 4 # number of cores
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#SBATCH -w g001 # DGX-2 node
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#SBATCH --gres=gpu:4 # number of V100's
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#SBATCH -t 0-00:10 # time (D-HH:MM)
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#SBATCH -o slurm.%N.%j.out # STDOUT
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#SBATCH -e slurm.%N.%j.err # STDERR
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ulimit -s 10240
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module load slurm
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module load openmpi/4.0.1
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module load cuda10.1/toolkit/10.1.243
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# Check how many gpu's your job got
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#nvidia-smi
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## Copy input files to the work directory:
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rm -rf /work/$USER/ShallowWaterGPU
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mkdir -p /work/$USER/ShallowWaterGPU
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cp -r . /work/$USER/ShallowWaterGPU
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# Run job
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# (Assumes Miniconda is installed in user root dir.)
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cd /work/$USER/ShallowWaterGPU
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mpirun --mca btl_openib_if_include mlx5_0 --mca btl_openib_warn_no_device_params_found 0 $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py
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cd $HOME/src/ShallowWaterGPU
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## Copy files from work directory:
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# (NOTE: Copying is not performed if job fails!)
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cp /work/$USER/ShallowWaterGPU/*.log .
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cp /work/$USER/ShallowWaterGPU/*.nc .
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