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feat(dissertation): write vdmj wrapper implementation in full

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pub/dissertation/chapters/design.tex
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@ -446,49 +446,105 @@ handled, or if there are type conversions errors occuring.
\subsection{VDMJ Wrapper}
\begin{itemize}
\item VDMJ is written in Java and it is free open source software that is accessible on
GitHub
\item This allows for VDMJ to be used as per the licence, GNU General Public License v3
(GPLv3)~\cite{vdmj:license}~\cite{gpl3}. This means that as VDMJ is being used as a
library, the code for this project has to be licensed with GPLv3 or any GPLv3 compatible
licence~\cite{gpl3:library}
\end{itemize}
% \begin{itemize}
% \item VDMJ is written in Java and it is free open source software that is accessible on
% GitHub
% \item This allows for VDMJ to be used as per the licence, GNU General Public License v3
% (GPLv3)~\cite{vdmj:license}~\cite{gpl3}. This means that as VDMJ is being used as a
% library, the code for this project has to be licensed with GPLv3 or any GPLv3 compatible
% licence~\cite{gpl3:library}
% \end{itemize}
VDMJ is written in Java, and it is free open source software that is accessible on GitHub.
This means that VDMJ can be used within any projects as long as the licence is followed.
It is important to follow for ethical and legal reasons, as not following the licensing
would result in breaking copyright law. However, it may not specifically break Newcastle
University's ethics, it would break the ethos behind GPLv3 and free open source software.
The licence VDMJ uses is the GNU General Public License v3 (GPLv3)~\cite{vdmj:license}\cite{gpl3}.
This means that as VDMJ is being used as a library, the code for this project has to be
licensed with GPLv3 or any GPLv3 compatible licence~\cite{gpl3:library}.
\subsubsection{Implementing VDMJ}
\begin{itemize}
\item VDMJ has packages available on Maven Central making adding it as a dependency simple
\item The package used was \lstinline|dk.au.ece.vdmj:vdmj| with version \lstinline|4.5.0|
\item However, initially when implementing VDMJ, \lstinline|4.5.0-P| was used accidentally,
and it led to debugging why imports were not working; and therefore the \lstinline|-P|
versions are not suitable
\item The initial method of implementation was using a Ktor server that would have run
alongside the desktop application, where the server would handle Representational State Transfer (REST)
API calls
\item This was unnecessary as the \textit{interactive} mode of VDMJ was able to run on
the desktop application itself. However, the Ktor was useful for debugging and testing as
an API route was created to allow VDMJ commands to be executed through a URL
% \begin{itemize}
% \item VDMJ has packages available on Maven Central making adding it as a dependency simple
% \item The package used was \lstinline|dk.au.ece.vdmj:vdmj| with version \lstinline|4.5.0|
% \item However, initially when implementing VDMJ, \lstinline|4.5.0-P| was used accidentally,
% and it led to debugging why imports were not working; and therefore the \lstinline|-P|
% versions are not suitable
% \item The initial method of implementation was using a Ktor server that would have run
% alongside the desktop application, where the server would handle Representational State Transfer (REST)
% API calls
% \item This was unnecessary as the \textit{interactive} mode of VDMJ was able to run on
% the desktop application itself. However, the Ktor was useful for debugging and testing as
% an API route was created to allow VDMJ commands to be executed through a URL
\item To be able to get the outputs from VDMJ, a \lstinline|ConsolePrintWriter| new had to be
created from the \lstinline|com.fujitsu.vdmj.messages| package; which handles writing to
the console \textit{stdout}. This then gets used to replace the \lstinline|Console.out| and
\lstinline|Console.err| in the \lstinline|com.fujitsu.vdmj.messages| package
% \item To be able to get the outputs from VDMJ, a \lstinline|ConsolePrintWriter| new had to be
% created from the \lstinline|com.fujitsu.vdmj.messages| package; which handles writing to
% the console \textit{stdout}. This then gets used to replace the \lstinline|Console.out| and
% \lstinline|Console.err| in the \lstinline|com.fujitsu.vdmj.messages| package
% \item Parsing commands into VDMJ interface - was more difficult
% \footnote{The objects created here are provided by the \lstinline|java.io| package.}
% \begin{itemize}
% \item Created a \lstinline|PipedInputStream| object, that gets connected to a \lstinline|PipedOutputStream|
% object by passing the latter object in as a parameter. The \lstinline|PipedOutputStream| is then used
% to pass inputs into \lstinline|PipedInputStream|
% \item To be able to write to this stream, a \lstinline|BufferedWriter| is created by passing the \lstinline|PipedOutputStream|
% with a bridge \lstinline|OutputStreamWriter| that encodes characters into bytes
% \item For VDMJ to be able to read the input stream, a separate object had to be created, \lstinline|BufferedReader|,
% where the \lstinline|PipedInputStream| gets parsed through a bridge, \lstinline|InputStreamReader| that converts
% bytes to characters
% % TODO create a diagram of this (better than having code)
% % BufferedWriter -> encode to byte -> Stream -> decode to char -> VDMJ
% \end{itemize}
% \end{itemize}
\textit{VDMJ} has packages available on Maven Central%
\footnote{Maven Central is a repository that stores dependencies required to build
projects}
making adding it as a dependency simple as it would require to be specified within
the \textit{Gradle} build configurations.
The package used was \lstinline|dk.au.ece.vdmj:vdmj| with version \lstinline|4.5.0|,
however, initially when implementing VDMJ, \lstinline|4.5.0-P| was used accidentally,
and it led to the rabbit hole of debugging why imports were not working, and it was
found that the \lstinline|-P| versions of VDMJ is not suitable to be used when being
implemented intentionally a project.
The initial method of implementation was to use a Ktor server that would run
alongside the desktop application, where communication between the desktop application
and the server would be handled through Representational State Transfer (REST) API calls.
However, this was unnecessary as the \textit{interactive} mode of \textit{VDMJ}
was able to run on the desktop application itself. But using Ktor was useful for
debugging and testing using as \textit{VDMJ} commands could be run through an
API route.
The major hurdle within implementing \textit{VDMJ} as a wrapper was fetching the
outputs that \textit{VDMJ} sends to the console. This was implemented by
creating a new \textit{VDMJ} console handler \\\lstinline|ConsolePrintWriter|, that
handles writing to \textit{stdout},
which is from the \lstinline|com.fujitsu.vdmj.messages| package.
This then gets used to replace the \lstinline|Console.out| and
\lstinline|Console.err|, from the same \textit{VDMJ} package, which
will store the outputs to the console into a variable instead.
Parsing commands into the \textit{VDMJ} interface was more difficult as it required
using Java functions\footnote{The objects created here are provided by the \lstinline|java.io| package.}
to act as if the program wrote something directly into the \textit{VDMJ} interactive console.
\autoref{fig:vdmj-io} shows a simplified flowchart of how inputs are handled.
A \lstinline|PipedInputStream| object was created, that gets connected to a
\lstinline|PipedOutputStream| object by passing the latter object in as a parameter.
The \lstinline|PipedOutputStream| is then used to pass inputs into \lstinline|PipedInputStream|.
The \lstinline|PipedInputStream| handles sending inputs to the \textit{VDMJ} console.
However, to be able to write to these streams, a \lstinline|BufferedWriter|,
which is used to send inputs, is created by
passing the \lstinline|PipedOutputStream| with a bridge \lstinline|OutputStreamWriter|
that encodes characters into bytes.
For \textit{VDMJ} to be able to read the input streams, the \lstinline|PipedInputStream|
gets parsed through a bridge, \lstinline|InputStreamReader| that converts
bytes to characters, and then allows \textit{VDMJ} read these characters through
a \lstinline|BufferedReader|.
\item Parsing commands into VDMJ interface - was more difficult
\footnote{The objects created here are provided by the \lstinline|java.io| package.}
\begin{itemize}
\item Created a \lstinline|PipedInputStream| object, that gets connected to a \lstinline|PipedOutputStream|
object by passing the latter object in as a parameter. The \lstinline|PipedOutputStream| is then used
to pass inputs into \lstinline|PipedInputStream|
\item To be able to write to this stream, a \lstinline|BufferedWriter| is created by passing the \lstinline|PipedOutputStream|
with a bridge \lstinline|OutputStreamWriter| that encodes characters into bytes
\item For VDMJ to be able to read the input stream, a separate object had to be created, \lstinline|BufferedReader|,
where the \lstinline|PipedInputStream| gets parsed through a bridge, \lstinline|InputStreamReader| that converts
bytes to characters
% TODO create a diagram of this (better than having code)
% BufferedWriter -> encode to byte -> Stream -> decode to char -> VDMJ
\end{itemize}
\end{itemize}
\begin{figure}[!htp]
\begin{tikzpicture}[node distance=2cm, align=center]
@ -511,17 +567,30 @@ handled, or if there are type conversions errors occuring.
\end{tikzpicture}
\centering
\caption[VDMJ IO Stream]{Flowchart of VDMJ Input/Output Stream handling}
\label{list:vdmj-io}
\label{fig:vdmj-io}
\end{figure}
\subsubsection{Handling VDMJ Outputs}
\begin{itemize}
\item VDMJ outputs are handled using string manipulation
\item Created into objects that are replicas of types in VDM-SL
\item The string manipulation allows specifying where the outputs
of the object go
\end{itemize}
\subsubsection{Handling VDMJ Command Outputs}
% \begin{itemize}
% \item VDMJ outputs are handled using string manipulation
% \item Created into objects that are replicas of types in VDM-SL
% \item The string manipulation allows specifying where the outputs
% of the object go
% \end{itemize}
When running a command in the \textit{VDMJ}, it will produce an output
as a string for the returned variable in the function that was executed.
To handle these strings, \textit{Kotlin} string manipulation was used,
similar concept to \textit{Regex},
to decode the string and convert the string into correct types and store them
in specific types in the formal specification, recreated in \textit{Kotlin}.
The types recreated from the formal specification were the records types.
This was done by using \textit{Kotlin} data classes,
which had functions implemented with the purpose of convert the stored types in \textit{Kotlin}
to an identical \textit{VDM-SL} representation of the values in that type.
% Talk about how XPC was used here, not how it was implemented
@ -579,7 +648,7 @@ handled, or if there are type conversions errors occuring.
%%%%% Simulator Connector Plugin %%%%%
% \section{Simulator Connector Plugin}
\section{Simulator Connector Plugin}
% Talk about creating your own (originally happened) vs using something else that was developed
% Maybe talk about original plan? i.e. <project root>/plugin

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