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Using work directory.

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This commit is contained in:
Martin Lilleeng Sætra 2020-10-16 23:03:29 +02:00
parent 7c9adb05be
commit 4b4d4b4717
1 changed files with 15 additions and 3 deletions
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18
dgx-2-test.job
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@ -12,11 +12,23 @@
ulimit -s 10240
module load slurm
module load openmpi/4.0.1
module load cuda10.1/toolkit/10.1.243
# Check how many gpu's your job got
#nvidia-smi
# Run job
cd /home/martinls/src/ShallowWaterGPU
mpirun --mca btl_openib_if_include mlx5_0 --mca btl_openib_warn_no_device_params_found 0 /home/martinls/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py
## Copy input files to the work directory:
mkdir -p /work/$USER/ShallowWaterGPU
cp -r . /work/$USER/ShallowWaterGPU
# Run job
# (Assumes Miniconda is installed in user root dir.)
cd /work/$USER/ShallowWaterGPU
mpirun --mca btl_openib_if_include mlx5_0 --mca btl_openib_warn_no_device_params_found 0 $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py
cd $HOME/src/ShallowWaterGPU
## Copy files from work directory:
# (NOTE: Copying is not performed if job fails!)
cp /work/$USER/ShallowWaterGPU/*.log .
cp /work/$USER/ShallowWaterGPU/*.nc .