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Adjusting job script

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Martin Lilleeng Sætra 2022-05-25 15:50:24 +02:00
parent 9749acb6fe
commit 286a5dd872
1 changed files with 15 additions and 1 deletions
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16
dgx-2_scaling_benchmark.job
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@ -8,6 +8,20 @@
#SBATCH -e slurm.%N.%j.err # STDERR #SBATCH -e slurm.%N.%j.err # STDERR
#SBATCH --reservation=martinls_6 #SBATCH --reservation=martinls_6
# For Linux 64, Open MPI is built with CUDA awareness but this support is disabled by default.
# To enable it, please set the environment variable OMPI_MCA_opal_cuda_support=true before
# launching your MPI processes. Equivalently, you can set the MCA parameter in the command line:
# mpiexec --mca opal_cuda_support 1 ...
#
# In addition, the UCX support is also built but disabled by default.
# To enable it, first install UCX (conda install -c conda-forge ucx). Then, set the environment
# variables OMPI_MCA_pml="ucx" OMPI_MCA_osc="ucx" before launching your MPI processes.
# Equivalently, you can set the MCA parameters in the command line:
# mpiexec --mca pml ucx --mca osc ucx ...
# Note that you might also need to set UCX_MEMTYPE_CACHE=n for CUDA awareness via UCX.
# Please consult UCX's documentation for detail.
ulimit -s 10240 ulimit -s 10240
module load slurm/20.02.7 module load slurm/20.02.7
module load cuda11.2/toolkit/11.2.2 module load cuda11.2/toolkit/11.2.2
@ -28,7 +42,7 @@ cd /work/$USER/$SLURM_JOB_ID/ShallowWaterGPU
#mpirun --mca btl_openib_if_include mlx5_0 --mca btl_openib_warn_no_device_params_found 0 $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile #mpirun --mca btl_openib_if_include mlx5_0 --mca btl_openib_warn_no_device_params_found 0 $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile
#nsys profile -t nvtx,cuda mpirun -np $SLURM_NTASKS numactl --cpunodebind=0 --localalloc $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile #nsys profile -t nvtx,cuda mpirun -np $SLURM_NTASKS numactl --cpunodebind=0 --localalloc $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile
#mpirun -np $SLURM_NTASKS numactl --cpunodebind=0 --localalloc $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile #mpirun -np $SLURM_NTASKS numactl --cpunodebind=0 --localalloc $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile
mpirun -np $SLURM_NTASKS numactl --cpunodebind=1 $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile mpirun -np $SLURM_NTASKS numactl --cpunodebind=1 --localalloc $HOME/miniconda3/envs/ShallowWaterGPU_HPC/bin/python3 mpiTesting.py -nx $NX -ny $NY --profile
cd $HOME/src/ShallowWaterGPU cd $HOME/src/ShallowWaterGPU
## Copy files from work directory: ## Copy files from work directory: